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Table 1 Fungal DNA present in Pinus radiata tissue culture material

From: Detection of asymptomatic fungal microorganisms in Pinus radiata tissue culture material

Tissue culture type and genotype number

PCR product amplifieda

Closest GenBank match of sequenced single-band PCR products

Fungal microorganism

Accession number

Sequence identity (%)

Embryogenic tissue

   
 

1

yes

-

-

-

 

2

yes

-

-

-

 

3

yes

-

-

-

 

4

yes

Uncultured ectomycorrhiza

EF218819

98

 

5

yes

-

-

-

 

6

yes

Mycena rubromarginata

EF530939

91

 

6

yes

Botryosphaeria parva

AM410965

99

 

7

yes

-

-

-

 

8

yes

-

-

-

 

9

yes

-

-

-

 

10

yes

Resincium bicolor

AF518763

99

Adventitious-axillary organogenesis shoots

  
 

11

yes

Epicoccum nigrum

AF455403

99

 

12

yes

Trametes sp.

AY968077

75

 

13

yes

-

-

-

 

14

yes

-

-

-

 

15

yes

Oligoporus placentus

AJ249267

79

 

16

yes

Drechslera erythrospila

AY004782

99

 

17

yes

Cladosporium sp.

EF432298

99

 

18

yes

Oligoporus placentus

AJ249267

79

 

19

yes

Basidiomycete

AF519892

79

 

20

yes

-

-

-

Epicotyl-axillary organogenesis shoots

  
 

11

yes

Fungal sp.

AM231388

98

 

12

yes

-

-

-

 

13

yes

-

-

-

 

14

yes

Armillaria hinnulea

AF394918

97

 

15

yes

-

-

-

 

16

yes

Coriolaceae

AY840564

93

 

16

yes

Botryobasidium subcoronatum

AJ389785

95

 

17

yes

Cyclaneusma minus

KM216324

100

 

18

yes

-

-

-

 

19

yes

Phellinus sp. or Trametes sp.

AF251437/ AY840588

99

 

20

yes

Rhodotorula yarrowii

AF444628

98

Mature organogenesis shoots

  
 

21

yes

Trametes versicolor

AF13996

95

 

22

yes

-

-

-

 

23

yes

-

-

-

 

24

yes

Petriella sordida

AY882360

98

 

25

yes

-

-

-

 

26

yes

-

-

-

 

27

yes

-

-

-

 

28

yes

Resinicium bicolour

AF518763

99

 

29

yes

-

-

-

 

30

yes

-

-

-

  1. aPCR products generated from nested PCR amplification using primers NSL1/NLB4 and ITS1-F/ITS4 (see Methods and materials)