Table 4 Significantly suppressed gene ontologies associated with biological processes as deduced by DAVID from a list of differentially expressed genes identified by limma analysis
Category | Term | Count | Pvalue | Fold enrichment | Benjamini | FDR |
|---|---|---|---|---|---|---|
Bark 8 | Â | Â | Â | Â | Â | Â |
GO:0048444 | Floral organ morphogenesis | 4 | 0.00 | 15.78 | 0.07 | 2.50 |
GO:0030244 | Cellulose biosynthetic process | 7 | 0.00 | 9.56 | 0.01 | 0.10 |
GO:0015833 | Peptide transport | 6 | 0.00 | 8.52 | 0.04 | 0.88 |
GO:0006857 | Oligopeptide transport | 5 | 0.00 | 8.07 | 0.10 | 4.56 |
GO:0030243 | Cellulose metabolic process | 8 | 0.00 | 5.07 | 0.05 | 1.41 |
GO:0009699 | Phenylpropanoid biosynthetic process | 13 | 0.00 | 4.91 | 0.00 | 0.02 |
GO:0009250 | Glucan biosynthetic process | 8 | 0.00 | 4.58 | 0.07 | 2.58 |
GO:0006073 | Cellular glucan metabolic process | 13 | 0.00 | 4.35 | 0.00 | 0.06 |
GO:0009698 | Phenylpropanoid metabolic process | 16 | 0.00 | 4.34 | 0.00 | 0.01 |
GO:0009414 | Response to water deprivation | 8 | 0.00 | 4.12 | 0.10 | 4.75 |
Mxylem 8 | Â | Â | Â | Â | Â | Â |
GO:0046274 | Lignin catabolic process | 17 | 0.00 | 6.25 | 0.00 | 0.00 |
GO:0046271 | Phenylpropanoid catabolic process | 17 | 0.00 | 6.25 | 0.00 | 0.00 |
GO:0048444 | Floral organ morphogenesis | 6 | 0.00 | 5.15 | 0.14 | 4.91 |
GO:0030244 | Cellulose biosynthetic process | 16 | 0.00 | 4.75 | 0.00 | 0.00 |
GO:0009808 | Lignin metabolic process | 31 | 0.00 | 4.35 | 0.00 | 0.00 |
GO:0051258 | Protein polymerisation | 25 | 0.00 | 4.29 | 0.00 | 0.00 |
GO:0042219 | Cellular amino acid derivative catabolic process | 19 | 0.00 | 3.96 | 0.00 | 0.00 |
GO:0007018 | Microtubule-based movement | 28 | 0.00 | 3.54 | 0.00 | 0.00 |
GO:0009698 | Phenylpropanoid metabolic process | 56 | 0.00 | 3.30 | 0.00 | 0.00 |
GO:0009809 | Lignin biosynthetic process | 13 | 0.00 | 3.14 | 0.03 | 0.68 |
Xylem 8 | Â | Â | Â | Â | Â | Â |
GO:0046274 | Lignin catabolic process | 8 | 0.00 | 4.40 | 0.11 | 2.32 |
GO:0046271 | Phenylpropanoid catabolic process | 8 | 0.00 | 4.40 | 0.11 | 2.32 |
GO:0006857 | Oligopeptide transport | 8 | 0.00 | 4.20 | 0.14 | 3.14 |
GO:0009808 | Lignin metabolic process | 19 | 0.00 | 3.99 | 0.00 | 0.00 |
GO:0009698 | Phenylpropanoid metabolic process | 41 | 0.00 | 3.61 | 0.00 | 0.00 |
GO:0009809 | Lignin biosynthetic process | 10 | 0.00 | 3.61 | 0.11 | 1.96 |
GO:0009699 | Phenylpropanoid biosynthetic process | 29 | 0.00 | 3.56 | 0.00 | 0.00 |
GO:0009813 | Flavonoid biosynthetic process | 16 | 0.00 | 3.30 | 0.01 | 0.09 |
GO:0016137 | Glycoside metabolic process | 10 | 0.00 | 3.21 | 0.19 | 4.74 |
GO:0009812 | Flavonoid metabolic process | 16 | 0.00 | 3.18 | 0.01 | 0.15 |