Table 2 Significantly enriched gene ontologies associated with biological processes as deduced by DAVID from a list of differentially expressed genes identified by limma analysis
Category | Term | Count | Pvalue | Fold enrichment | BH | FDR |
|---|---|---|---|---|---|---|
Mxylem 1 | Â | Â | Â | Â | Â | |
GO:0010286 | Heat acclimation | 3 | 0.00 | 34.03 | 0.48 | 4.39 |
GO:0006952 | Defence response | 16 | 0.00 | 5.39 | 0.00 | 0.00 |
Xylem 1 | Â | Â | Â | Â | Â | Â |
GO:0009813 | Flavonoid biosynthetic process | 15 | 0.00 | 18.17 | 0.00 | 0.00 |
GO:0009812 | Flavonoid metabolic process | 15 | 0.00 | 17.54 | 0.00 | 0.00 |
GO:0009699 | Phenylpropanoid biosynthetic process | 18 | 0.00 | 12.99 | 0.00 | 0.00 |
GO:0009698 | Phenylpropanoid metabolic process | 18 | 0.00 | 9.32 | 0.00 | 0.00 |
GO:0042398 | Cellular amino acid derivative biosynthetic process | 20 | 0.00 | 8.37 | 0.00 | 0.00 |
GO:0019438 | Aromatic compound biosynthetic process | 19 | 0.00 | 7.08 | 0.00 | 0.00 |
GO:0006575 | Cellular amino acid derivative metabolic process | 20 | 0.00 | 5.06 | 0.00 | 0.00 |
GO:0042542 | Response to hydrogen peroxide | 7 | 0.00 | 5.05 | 0.10 | 3.57 |
GO:0019748 | Secondary metabolic process | 21 | 0.00 | 4.88 | 0.00 | 0.00 |
GO:0006952 | Defence response | 15 | 0.00 | 3.36 | 0.01 | 0.20 |
Bark 8 | Â | Â | Â | Â | Â | Â |
GO:0009853 | Photorespiration | 5 | 0.00 | 17.49 | 0.01 | 0.23 |
GO:0019253 | Reductive pentose-phosphate cycle | 4 | 0.00 | 15.64 | 0.05 | 2.73 |
GO:0015977 | Carbon utilisation by fixation of carbon dioxide | 4 | 0.00 | 13.99 | 0.07 | 3.78 |
GO:0019685 | Photosynthesis, dark reaction | 4 | 0.00 | 13.29 | 0.07 | 4.39 |
GO:0042744 | Hydrogen peroxide catabolic process | 9 | 0.00 | 8.31 | 0.00 | 0.02 |
GO:0009813 | Flavonoid biosynthetic process | 7 | 0.00 | 8.31 | 0.01 | 0.26 |
GO:0043094 | Cellular metabolic compound salvage | 5 | 0.00 | 8.11 | 0.07 | 4.47 |
GO:0070301 | Cellular response to hydrogen peroxide | 9 | 0.00 | 8.08 | 0.00 | 0.02 |
GO:0009812 | Flavonoid metabolic process | 7 | 0.00 | 8.02 | 0.01 | 0.31 |
GO:0042743 | Hydrogen peroxide metabolic process | 9 | 0.00 | 7.98 | 0.00 | 0.02 |
Mxylem 8 | Â | Â | Â | Â | Â | Â |
GO:0009813 | Flavonoid biosynthetic process | 34 | 0.00 | 7.53 | 0.00 | 0.00 |
GO:0009812 | Flavonoid metabolic process | 35 | 0.00 | 7.48 | 0.00 | 0.00 |
GO:0009699 | Phenylpropanoid biosynthetic process | 40 | 0.00 | 5.27 | 0.00 | 0.00 |
GO:0009698 | Phenylpropanoid metabolic process | 45 | 0.00 | 4.26 | 0.00 | 0.00 |
GO:0009626 | Plant-type hypersensitive response | 8 | 0.00 | 4.13 | 0.10 | 3.62 |
GO:0034050 | Host programmed cell death induced by symbiont | 8 | 0.00 | 4.13 | 0.10 | 3.62 |
GO:0009739 | Response to gibberellin stimulus | 11 | 0.00 | 3.50 | 0.05 | 1.34 |
GO:0042398 | Cellular amino acid derivative biosynthetic process | 41 | 0.00 | 3.14 | 0.00 | 0.00 |
GO:0019438 | Aromatic compound biosynthetic process | 44 | 0.00 | 3.00 | 0.00 | 0.00 |
GO:0009415 | Response to water | 18 | 0.00 | 2.94 | 0.01 | 0.15 |
Xylem 8 | Â | Â | Â | Â | Â | Â |
GO:0001906 | Cell killing | 6 | 0.00 | 9.31 | 0.01 | 0.38 |
GO:0031640 | Killing of cells of another organism | 6 | 0.00 | 9.31 | 0.01 | 0.38 |
GO:0009812 | Flavonoid metabolic process | 29 | 0.00 | 8.54 | 0.00 | 0.00 |
GO:0009813 | Flavonoid biosynthetic process | 28 | 0.00 | 8.54 | 0.00 | 0.00 |
GO:0009225 | Nucleotide-sugar metabolic process | 7 | 0.00 | 7.03 | 0.01 | 0.45 |
GO:0006032 | Chitin catabolic process | 9 | 0.00 | 6.68 | 0.00 | 0.05 |
GO:0016998 | Cell wall macromolecule catabolic process | 9 | 0.00 | 6.15 | 0.00 | 0.09 |
GO:0006026 | Aminoglycan catabolic process | 9 | 0.00 | 6.15 | 0.00 | 0.09 |
GO:0009699 | Phenylpropanoid biosynthetic process | 32 | 0.00 | 5.81 | 0.00 | 0.00 |
GO:0009698 | Phenylpropanoid metabolic process | 42 | 0.00 | 5.47 | 0.00 | 0.00 |